The past, present, and future of the brain imaging data structure (BIDS)

Russell A. Poldrack; Christopher J. Markiewicz; Stefan Appelhoff; Yoni K. Ashar; Tibor Auer; Sylvain Baillet; Shashank Bansal; Leandro Beltrachini; Christian G. Benar; Giacomo Bertazzoli; Suyash Bhogawar; Ross W. Blair; Marta Bortoletto; Mathieu Boudreau; Teon L. Brooks; Vince D. Calhoun; Filippo Maria Castelli; Patricia Clement; Alexander L. Cohen; Julien Cohen-Adad; Sasha D’Ambrosio; Gilles de Hollander; María de la Iglesia-Vayá; Alejandro de la Vega; Arnaud Delorme; Orrin Devinsky; Dejan Draschkow; Eugene Paul Duff; Elizabeth DuPre; Eric Earl; Oscar Esteban; Franklin W. Feingold; Guillaume Flandin; Anthony Galassi; Giuseppe Gallitto; Melanie Ganz; Rémi Gau; James Gholam; Satrajit S. Ghosh; Alessio Giacomel; Ashley G. Gillman; Padraig Gleeson; Alexandre Gramfort; Samuel Guay; Giacomo Guidali; Yaroslav O. Halchenko; Daniel A. Handwerker; Nell Hardcastle; Peer Herholz; Dora Hermes; Christopher J. Honey; Robert B. Innis; Horea Ioan Ioanas; Andrew Jahn; Agah Karakuzu; David B. Keator; Gregory Kiar; Balint Kincses; Angela R. Laird; Jonathan C. Lau; Alberto Lazari; Jon Haitz Legarreta; Adam Li; Xiangrui Li; Bradley C. Love; Hanzhang Lu; Eleonora Marcantoni; Camille Maumet; Giacomo Mazzamuto; Steven L. Meisler; Mark Mikkelsen; Henk Mutsaerts; Thomas E. Nichols; Aki Nikolaidis; Gustav Nilsonne; Guiomar Niso; Martin Norgaard; Thomas W. Okell; Robert Oostenveld; Eduard Ort; Patrick J. Park; Mateusz Pawlik; Cyril R. Pernet; Franco Pestilli; Jan Petr; Christophe Phillips; Jean Baptiste Poline; Luca Pollonini; Pradeep Reddy Raamana; Petra Ritter; Gaia Rizzo; Kay A. Robbins; Alexander P. Rockhill; Christine Rogers; Ariel Rokem; Chris Rorden; Alexandre Routier; Jose Manuel Saborit-Torres; Taylor Salo; Michael Schirner; Robert E. Smith; Tamas Spisak; Julia Sprenger; Nicole C. Swann; Martin Szinte; Sylvain Takerkart; Bertrand Thirion; Adam G. Thomas; Sajjad Torabian; Gael Varoquaux; Bradley Voytek; Julius Welzel; Martin Wilson; Tal Yarkoni; Krzysztof J. Gorgolewski

doi:10.1162/imag_a_00103

The past, present, and future of the brain imaging data structure (BIDS)

Russell A. Poldrack, Christopher J. Markiewicz, Stefan Appelhoff, Yoni K. Ashar, Tibor Auer, Sylvain Baillet, Shashank Bansal, Leandro Beltrachini, Christian G. Benar, Giacomo Bertazzoli, Suyash Bhogawar, Ross W. Blair, Marta Bortoletto, Mathieu Boudreau, Teon L. Brooks, Vince D. Calhoun, Filippo Maria Castelli, Patricia Clement, Alexander L. Cohen, Julien Cohen-AdadSasha D’Ambrosio, Gilles de Hollander, María de la Iglesia-Vayá, Alejandro de la Vega, Arnaud Delorme, Orrin Devinsky, Dejan Draschkow, Eugene Paul Duff, Elizabeth DuPre, Eric Earl, Oscar Esteban, Franklin W. Feingold, Guillaume Flandin, Anthony Galassi, Giuseppe Gallitto, Melanie Ganz, Rémi Gau, James Gholam, Satrajit S. Ghosh, Alessio Giacomel, Ashley G. Gillman, Padraig Gleeson, Alexandre Gramfort, Samuel Guay, Giacomo Guidali, Yaroslav O. Halchenko, Daniel A. Handwerker, Nell Hardcastle, Peer Herholz, Dora Hermes, Christopher J. Honey, Robert B. Innis, Horea Ioan Ioanas, Andrew Jahn, Agah Karakuzu, David B. Keator, Gregory Kiar, Balint Kincses, Angela R. Laird, Jonathan C. Lau, Alberto Lazari, Jon Haitz Legarreta, Adam Li, Xiangrui Li, Bradley C. Love, Hanzhang Lu, Eleonora Marcantoni, Camille Maumet, Giacomo Mazzamuto, Steven L. Meisler, Mark Mikkelsen, Henk Mutsaerts, Thomas E. Nichols, Aki Nikolaidis, Gustav Nilsonne, Guiomar Niso, Martin Norgaard, Thomas W. Okell, Robert Oostenveld, Eduard Ort, Patrick J. Park, Mateusz Pawlik, Cyril R. Pernet, Franco Pestilli, Jan Petr, Christophe Phillips, Jean Baptiste Poline, Luca Pollonini, Pradeep Reddy Raamana, Petra Ritter, Gaia Rizzo, Kay A. Robbins, Alexander P. Rockhill, Christine Rogers, Ariel Rokem, Chris Rorden, Alexandre Routier, Jose Manuel Saborit-Torres, Taylor Salo, Michael Schirner, Robert E. Smith, Tamas Spisak, Julia Sprenger, Nicole C. Swann, Martin Szinte, Sylvain Takerkart, Bertrand Thirion, Adam G. Thomas, Sajjad Torabian, Gael Varoquaux, Bradley Voytek, Julius Welzel, Martin Wilson, Tal Yarkoni, Krzysztof J. Gorgolewski

Research output: Contribution to journal › Review article › peer-review

17 Scopus citations

Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

Original language	English (US)
Pages (from-to)	1-19
Number of pages	19
Journal	Imaging Neuroscience
Volume	2
DOIs	https://doi.org/10.1162/imag_a_00103
State	Published - Mar 2024

Keywords

data organization
neuroimaging
neuroinformatics
standards

ASJC Scopus subject areas

Medicine (miscellaneous)
Clinical Neurology
Radiology Nuclear Medicine and imaging
Neuroscience (miscellaneous)

Access to Document

10.1162/imag_a_00103

Cite this

Poldrack, R. A., Markiewicz, C. J., Appelhoff, S., Ashar, Y. K., Auer, T., Baillet, S., Bansal, S., Beltrachini, L., Benar, C. G., Bertazzoli, G., Bhogawar, S., Blair, R. W., Bortoletto, M., Boudreau, M., Brooks, T. L., Calhoun, V. D., Castelli, F. M., Clement, P., Cohen, A. L., ... Gorgolewski, K. J. (2024). The past, present, and future of the brain imaging data structure (BIDS). Imaging Neuroscience, 2, 1-19. https://doi.org/10.1162/imag_a_00103

Poldrack, RA, Markiewicz, CJ, Appelhoff, S, Ashar, YK, Auer, T, Baillet, S, Bansal, S, Beltrachini, L, Benar, CG, Bertazzoli, G, Bhogawar, S, Blair, RW, Bortoletto, M, Boudreau, M, Brooks, TL, Calhoun, VD, Castelli, FM, Clement, P, Cohen, AL, Cohen-Adad, J, D’Ambrosio, S, de Hollander, G, de la Iglesia-Vayá, M, de la Vega, A, Delorme, A, Devinsky, O, Draschkow, D, Duff, EP, DuPre, E, Earl, E, Esteban, O, Feingold, FW, Flandin, G, Galassi, A, Gallitto, G, Ganz, M, Gau, R, Gholam, J, Ghosh, SS, Giacomel, A, Gillman, AG, Gleeson, P, Gramfort, A, Guay, S, Guidali, G, Halchenko, YO, Handwerker, DA, Hardcastle, N, Herholz, P, Hermes, D, Honey, CJ, Innis, RB, Ioanas, HI, Jahn, A, Karakuzu, A, Keator, DB, Kiar, G, Kincses, B, Laird, AR, Lau, JC, Lazari, A, Legarreta, JH, Li, A, Li, X, Love, BC, Lu, H, Marcantoni, E, Maumet, C, Mazzamuto, G, Meisler, SL, Mikkelsen, M, Mutsaerts, H, Nichols, TE, Nikolaidis, A, Nilsonne, G, Niso, G, Norgaard, M, Okell, TW, Oostenveld, R, Ort, E, Park, PJ, Pawlik, M, Pernet, CR, Pestilli, F, Petr, J, Phillips, C, Poline, JB, Pollonini, L, Raamana, PR, Ritter, P, Rizzo, G, Robbins, KA, Rockhill, AP, Rogers, C, Rokem, A, Rorden, C, Routier, A, Saborit-Torres, JM, Salo, T, Schirner, M, Smith, RE, Spisak, T, Sprenger, J, Swann, NC, Szinte, M, Takerkart, S, Thirion, B, Thomas, AG, Torabian, S, Varoquaux, G, Voytek, B, Welzel, J, Wilson, M, Yarkoni, T & Gorgolewski, KJ 2024, 'The past, present, and future of the brain imaging data structure (BIDS)', Imaging Neuroscience, vol. 2, pp. 1-19. https://doi.org/10.1162/imag_a_00103

@article{0c27db0035ec478a8addb9dd3aba3885,

title = "The past, present, and future of the brain imaging data structure (BIDS)",

abstract = "The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.",

keywords = "data organization, neuroimaging, neuroinformatics, standards",

author = "Poldrack, \{Russell A.\} and Markiewicz, \{Christopher J.\} and Stefan Appelhoff and Ashar, \{Yoni K.\} and Tibor Auer and Sylvain Baillet and Shashank Bansal and Leandro Beltrachini and Benar, \{Christian G.\} and Giacomo Bertazzoli and Suyash Bhogawar and Blair, \{Ross W.\} and Marta Bortoletto and Mathieu Boudreau and Brooks, \{Teon L.\} and Calhoun, \{Vince D.\} and Castelli, \{Filippo Maria\} and Patricia Clement and Cohen, \{Alexander L.\} and Julien Cohen-Adad and Sasha D{\textquoteright}Ambrosio and \{de Hollander\}, Gilles and \{de la Iglesia-Vay{\'a}\}, Mar{\'i}a and \{de la Vega\}, Alejandro and Arnaud Delorme and Orrin Devinsky and Dejan Draschkow and Duff, \{Eugene Paul\} and Elizabeth DuPre and Eric Earl and Oscar Esteban and Feingold, \{Franklin W.\} and Guillaume Flandin and Anthony Galassi and Giuseppe Gallitto and Melanie Ganz and R{\'e}mi Gau and James Gholam and Ghosh, \{Satrajit S.\} and Alessio Giacomel and Gillman, \{Ashley G.\} and Padraig Gleeson and Alexandre Gramfort and Samuel Guay and Giacomo Guidali and Halchenko, \{Yaroslav O.\} and Handwerker, \{Daniel A.\} and Nell Hardcastle and Peer Herholz and Dora Hermes and Honey, \{Christopher J.\} and Innis, \{Robert B.\} and Ioanas, \{Horea Ioan\} and Andrew Jahn and Agah Karakuzu and Keator, \{David B.\} and Gregory Kiar and Balint Kincses and Laird, \{Angela R.\} and Lau, \{Jonathan C.\} and Alberto Lazari and Legarreta, \{Jon Haitz\} and Adam Li and Xiangrui Li and Love, \{Bradley C.\} and Hanzhang Lu and Eleonora Marcantoni and Camille Maumet and Giacomo Mazzamuto and Meisler, \{Steven L.\} and Mark Mikkelsen and Henk Mutsaerts and Nichols, \{Thomas E.\} and Aki Nikolaidis and Gustav Nilsonne and Guiomar Niso and Martin Norgaard and Okell, \{Thomas W.\} and Robert Oostenveld and Eduard Ort and Park, \{Patrick J.\} and Mateusz Pawlik and Pernet, \{Cyril R.\} and Franco Pestilli and Jan Petr and Christophe Phillips and Poline, \{Jean Baptiste\} and Luca Pollonini and Raamana, \{Pradeep Reddy\} and Petra Ritter and Gaia Rizzo and Robbins, \{Kay A.\} and Rockhill, \{Alexander P.\} and Christine Rogers and Ariel Rokem and Chris Rorden and Alexandre Routier and Saborit-Torres, \{Jose Manuel\} and Taylor Salo and Michael Schirner and Smith, \{Robert E.\} and Tamas Spisak and Julia Sprenger and Swann, \{Nicole C.\} and Martin Szinte and Sylvain Takerkart and Bertrand Thirion and Thomas, \{Adam G.\} and Sajjad Torabian and Gael Varoquaux and Bradley Voytek and Julius Welzel and Martin Wilson and Tal Yarkoni and Gorgolewski, \{Krzysztof J.\}",

note = "Publisher Copyright: {\textcopyright} 2024 Massachusetts Institute of Technology. Published under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.",

year = "2024",

month = mar,

doi = "10.1162/imag\_a\_00103",

language = "English (US)",

volume = "2",

pages = "1--19",

journal = "Imaging Neuroscience",

issn = "2837-6056",

publisher = "MIT Press",

}

TY - JOUR

T1 - The past, present, and future of the brain imaging data structure (BIDS)

AU - Poldrack, Russell A.

AU - Markiewicz, Christopher J.

AU - Appelhoff, Stefan

AU - Ashar, Yoni K.

AU - Auer, Tibor

AU - Baillet, Sylvain

AU - Bansal, Shashank

AU - Beltrachini, Leandro

AU - Benar, Christian G.

AU - Bertazzoli, Giacomo

AU - Bhogawar, Suyash

AU - Blair, Ross W.

AU - Bortoletto, Marta

AU - Boudreau, Mathieu

AU - Brooks, Teon L.

AU - Calhoun, Vince D.

AU - Castelli, Filippo Maria

AU - Clement, Patricia

AU - Cohen, Alexander L.

AU - Cohen-Adad, Julien

AU - D’Ambrosio, Sasha

AU - de Hollander, Gilles

AU - de la Iglesia-Vayá, María

AU - de la Vega, Alejandro

AU - Delorme, Arnaud

AU - Devinsky, Orrin

AU - Draschkow, Dejan

AU - Duff, Eugene Paul

AU - DuPre, Elizabeth

AU - Earl, Eric

AU - Esteban, Oscar

AU - Feingold, Franklin W.

AU - Flandin, Guillaume

AU - Galassi, Anthony

AU - Gallitto, Giuseppe

AU - Ganz, Melanie

AU - Gau, Rémi

AU - Gholam, James

AU - Ghosh, Satrajit S.

AU - Giacomel, Alessio

AU - Gillman, Ashley G.

AU - Gleeson, Padraig

AU - Gramfort, Alexandre

AU - Guay, Samuel

AU - Guidali, Giacomo

AU - Halchenko, Yaroslav O.

AU - Handwerker, Daniel A.

AU - Hardcastle, Nell

AU - Herholz, Peer

AU - Hermes, Dora

AU - Honey, Christopher J.

AU - Innis, Robert B.

AU - Ioanas, Horea Ioan

AU - Jahn, Andrew

AU - Karakuzu, Agah

AU - Keator, David B.

AU - Kiar, Gregory

AU - Kincses, Balint

AU - Laird, Angela R.

AU - Lau, Jonathan C.

AU - Lazari, Alberto

AU - Legarreta, Jon Haitz

AU - Li, Adam

AU - Li, Xiangrui

AU - Love, Bradley C.

AU - Lu, Hanzhang

AU - Marcantoni, Eleonora

AU - Maumet, Camille

AU - Mazzamuto, Giacomo

AU - Meisler, Steven L.

AU - Mikkelsen, Mark

AU - Mutsaerts, Henk

AU - Nichols, Thomas E.

AU - Nikolaidis, Aki

AU - Nilsonne, Gustav

AU - Niso, Guiomar

AU - Norgaard, Martin

AU - Okell, Thomas W.

AU - Oostenveld, Robert

AU - Ort, Eduard

AU - Park, Patrick J.

AU - Pawlik, Mateusz

AU - Pernet, Cyril R.

AU - Pestilli, Franco

AU - Petr, Jan

AU - Phillips, Christophe

AU - Poline, Jean Baptiste

AU - Pollonini, Luca

AU - Raamana, Pradeep Reddy

AU - Ritter, Petra

AU - Rizzo, Gaia

AU - Robbins, Kay A.

AU - Rockhill, Alexander P.

AU - Rogers, Christine

AU - Rokem, Ariel

AU - Rorden, Chris

AU - Routier, Alexandre

AU - Saborit-Torres, Jose Manuel

AU - Salo, Taylor

AU - Schirner, Michael

AU - Smith, Robert E.

AU - Spisak, Tamas

AU - Sprenger, Julia

AU - Swann, Nicole C.

AU - Szinte, Martin

AU - Takerkart, Sylvain

AU - Thirion, Bertrand

AU - Thomas, Adam G.

AU - Torabian, Sajjad

AU - Varoquaux, Gael

AU - Voytek, Bradley

AU - Welzel, Julius

AU - Wilson, Martin

AU - Yarkoni, Tal

AU - Gorgolewski, Krzysztof J.

PY - 2024/3

Y1 - 2024/3

N2 - The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

AB - The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

KW - data organization

KW - neuroimaging

KW - neuroinformatics

KW - standards

UR - https://www.scopus.com/pages/publications/105009781563

UR - https://www.scopus.com/inward/citedby.url?scp=105009781563&partnerID=8YFLogxK

U2 - 10.1162/imag_a_00103

DO - 10.1162/imag_a_00103

M3 - Review article

AN - SCOPUS:105009781563

SN - 2837-6056

VL - 2

SP - 1

EP - 19

JO - Imaging Neuroscience

JF - Imaging Neuroscience

ER -

The past, present, and future of the brain imaging data structure (BIDS)

Abstract

Keywords

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this