Frames-based denoising in 3D confocal microscopy imaging

Ioannis Konstantinidis; Alberto Santamaría-Pang; Ioannis A. Kakadiaris

doi:10.1109/iembs.2005.1616401

Frames-based denoising in 3D confocal microscopy imaging

Ioannis Konstantinidis, Alberto Santamaría-Pang, Ioannis A. Kakadiaris

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

5 Scopus citations

Abstract

In this paper, we propose a novel denoising method for 3D confocal microscopy data based on robust edge detection. Our approach relies on the construction of a non-separable frame system in 3D that incorporates the Sobel operator in dual spatial directions. This multidirectional set of digital filters is capable of robustly detecting edge information by ensemble thresholding of the filtered data. We demonstrate the application of our method to both synthetic and real confocal microscopy data by comparing it to denoising methods based on separable 3D wavelets and 3D median filtering, and report very encouraging results.

Original language	English (US)
Title of host publication	Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	290-293
Number of pages	4
ISBN (Print)	0780387406, 9780780387409
DOIs	https://doi.org/10.1109/iembs.2005.1616401
State	Published - 2005
Event	2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005 - Shanghai, China Duration: Sep 1 2005 → Sep 4 2005

Publication series

Name	Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings
Volume	7 VOLS
ISSN (Print)	0589-1019

Other

Other	2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005
Country/Territory	China
City	Shanghai
Period	9/1/05 → 9/4/05

ASJC Scopus subject areas

Signal Processing
Biomedical Engineering
Computer Vision and Pattern Recognition
Health Informatics

Access to Document

10.1109/iembs.2005.1616401

Cite this

Konstantinidis, I., Santamaría-Pang, A., & Kakadiaris, I. A. (2005). Frames-based denoising in 3D confocal microscopy imaging. In Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005 (pp. 290-293). Article 1616401 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; Vol. 7 VOLS). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/iembs.2005.1616401

Frames-based denoising in 3D confocal microscopy imaging. / Konstantinidis, Ioannis; Santamaría-Pang, Alberto; Kakadiaris, Ioannis A.
Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005. Institute of Electrical and Electronics Engineers Inc., 2005. p. 290-293 1616401 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; Vol. 7 VOLS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Konstantinidis, I, Santamaría-Pang, A & Kakadiaris, IA 2005, Frames-based denoising in 3D confocal microscopy imaging. in Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005., 1616401, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings, vol. 7 VOLS, Institute of Electrical and Electronics Engineers Inc., pp. 290-293, 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005, Shanghai, China, 9/1/05. https://doi.org/10.1109/iembs.2005.1616401

Konstantinidis I, Santamaría-Pang A, Kakadiaris IA. Frames-based denoising in 3D confocal microscopy imaging. In Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005. Institute of Electrical and Electronics Engineers Inc. 2005. p. 290-293. 1616401. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings). doi: 10.1109/iembs.2005.1616401

Konstantinidis, Ioannis ; Santamaría-Pang, Alberto ; Kakadiaris, Ioannis A. / Frames-based denoising in 3D confocal microscopy imaging. Proceedings of the 2005 27th Annual International Conference of the Engineering in Medicine and Biology Society, IEEE-EMBS 2005. Institute of Electrical and Electronics Engineers Inc., 2005. pp. 290-293 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

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Frames-based denoising in 3D confocal microscopy imaging

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