Entropic unfolding of DNA molecules in nanofluidic channels

Stephen L. Levy, John T. Mannion, Ji Cheng, Christian H. Reccius, Harold G. Craighead

Research output: Contribution to journalArticlepeer-review

84 Scopus citations

Abstract

Single DNA molecules confined to nanoscale fluidic channels extend along the channel axis in order to minimize their conformational free energy. When such molecules are forced into a nanoscale fluidic channel under the application of an external electric field, monomers near the middle of the DNA molecule may enter first, resulting in a folded configuration with less entropy than an unfolded molecule. The increased free energy of a folded molecule results in two effects: an increase in extension factor per unit length for each segment of the molecule, and a spatially localized force that causes the molecule to spontaneously unfold. The ratio of this unfolding force to hydrodynamic friction per DNA contour length is measured in nanochannels with two different diameters.

Original languageEnglish (US)
Pages (from-to)3839-3844
Number of pages6
JournalNano Letters
Volume8
Issue number11
DOIs
StatePublished - Nov 2008

ASJC Scopus subject areas

  • Bioengineering
  • Chemistry(all)
  • Materials Science(all)
  • Condensed Matter Physics
  • Mechanical Engineering

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