@article{5d536262ca4a4271a4c4e1d69404a0a3,
title = "Electron microscopy, immunostaining, cytoskeleton visualization, in situ hybridization, and three-dimensional reconstruction of Xenopus oocytes",
abstract = "Although the overwhelming development of molecular techniques in recent decades has made ultrastructural studies less popular, to the point that ultrastructural interpretation is becoming a dying art, it still remains an indispensable tool for cell and developmental biologists. The introduction of EM-immunocytochemistry and three-dimensional visualization methods allows us to complement the knowledge gained from ultrastructural and molecular approaches. Because the first clues about the functions of newly discovered genes often come from the subcellular localization patterns of their proteins or RNAs, in this chapter we describe the methods that allow for precise ultrastructural localization and visualization of protein and RNA molecules within the compartments, organelles, and cytoskeleton of Xenopus oocytes.",
keywords = "3D reconstruction, Immunostaining, Oogenesis, Ultrastructure, Xenopus",
author = "Bilinski, {Szczepan M.} and Jaglarz, {Mariusz K.} and Dougherty, {Matthew T.} and Malgorzata Kloc",
note = "Funding Information: Although there is a large number of visualization software packages, a few are frequently used by the electron microscopy community: Amira, Chimera, and SciRun. Chimera ( http://www.cgl.ucsf.edu/chimera/ ) is an open-source molecular-microscopy visualization tool developed by the Resource for Biocomputing, Visualization, and Informatics and is funded by NCRR. SciRun ( http://scirun.org ) is an open-source package developed by the University of Utah{\textquoteright}s Center for Integrative Biomedical Computing, also funded by the NCRR. All three packages were developed in academic settings and have numerous technical features. Each offers a number of tutorials to demonstrate basic capabilities and illustrate methods of constructing highly complex visualizations and animations. The examples of 3D reconstruction of Xenopus oocytes and organelles are shown in Fig. 4 . Copyright: Copyright 2010 Elsevier B.V., All rights reserved.",
year = "2010",
month = may,
doi = "10.1016/j.ymeth.2009.12.003",
language = "English (US)",
volume = "51",
pages = "11--19",
journal = "Methods",
issn = "1046-2023",
publisher = "Academic Press",
number = "1",
}