Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm

Vrutant V. Shah; Benjamin Soibam; Ruth A. Ritter; Ashley Benham; Jamina Oomen; Amy K. Sater

doi:10.1016/j.dib.2016.09.054

Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm

Vrutant V. Shah, Benjamin Soibam, Ruth A. Ritter, Ashley Benham, Jamina Oomen, Amy K. Sater

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Abstract

Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].

Original language	English (US)
Pages (from-to)	699-703
Number of pages	5
Journal	Data in Brief
Volume	9
DOIs	https://doi.org/10.1016/j.dib.2016.09.054
State	Published - Dec 2016

Keywords

Ectoderm
Neural
Xenopus
microRNA

ASJC Scopus subject areas

General

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10.1016/j.dib.2016.09.054

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title = "Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm",

abstract = "Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].",

keywords = "Ectoderm, Neural, Xenopus, microRNA",

author = "Shah, {Vrutant V.} and Benjamin Soibam and Ritter, {Ruth A.} and Ashley Benham and Jamina Oomen and Sater, {Amy K.}",

note = "Publisher Copyright: {\textcopyright} 2016 The Authors",

year = "2016",

month = dec,

doi = "10.1016/j.dib.2016.09.054",

language = "English (US)",

volume = "9",

pages = "699--703",

journal = "Data in Brief",

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AU - Shah, Vrutant V.

AU - Soibam, Benjamin

AU - Ritter, Ruth A.

AU - Benham, Ashley

AU - Oomen, Jamina

AU - Sater, Amy K.

PY - 2016/12

Y1 - 2016/12

N2 - Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].

AB - Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript “MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm” (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].

KW - Ectoderm

KW - Neural

KW - Xenopus

KW - microRNA

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DO - 10.1016/j.dib.2016.09.054

M3 - Article

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SN - 2352-3409

VL - 9

SP - 699

EP - 703

JO - Data in Brief

JF - Data in Brief

ER -

Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm

Abstract

Keywords

ASJC Scopus subject areas

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