Coding model for translation in E. coli K-12

Elebeoba May; Mladen A. Vouk; Donald L. Bitzer; David I. Rosnick

Coding model for translation in E. coli K-12

Elebeoba May, Mladen A. Vouk, Donald L. Bitzer, David I. Rosnick

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Various computational methods for determining protein producing regions in a given genome are based on engineering constructs such as Hidden Markov Models and neural networks. This work presents a coding theory approach to modeling the process of protein translation initiation. The messenger RNA (mRNA) is viewed as a noisy encoded message and the ribosome as a block code minimum distance decoder. The results of applying this model to the Escherichia coli K-12 are presented.

Original language	English (US)
Title of host publication	Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings
Publisher	Institute of Electrical and Electronics Engineers Inc.
Number of pages	1
Volume	2
ISBN (Print)	0780356756
State	Published - Dec 1 1999
Event	Proceedings of the 1999 IEEE Engineering in Medicine and Biology 21st Annual Conference and the 1999 Fall Meeting of the Biomedical Engineering Society (1st Joint BMES / EMBS) - Atlanta, GA, USA Duration: Oct 13 1999 → Oct 16 1999

Other

Other	Proceedings of the 1999 IEEE Engineering in Medicine and Biology 21st Annual Conference and the 1999 Fall Meeting of the Biomedical Engineering Society (1st Joint BMES / EMBS)
City	Atlanta, GA, USA
Period	10/13/99 → 10/16/99

ASJC Scopus subject areas

Signal Processing
Biomedical Engineering
Computer Vision and Pattern Recognition
Health Informatics

Cite this

May, E, Vouk, MA, Bitzer, DL & Rosnick, DI 1999, Coding model for translation in E. coli K-12. in Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. vol. 2, Institute of Electrical and Electronics Engineers Inc., Proceedings of the 1999 IEEE Engineering in Medicine and Biology 21st Annual Conference and the 1999 Fall Meeting of the Biomedical Engineering Society (1st Joint BMES / EMBS), Atlanta, GA, USA, 10/13/99.

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AB - Various computational methods for determining protein producing regions in a given genome are based on engineering constructs such as Hidden Markov Models and neural networks. This work presents a coding theory approach to modeling the process of protein translation initiation. The messenger RNA (mRNA) is viewed as a noisy encoded message and the ribosome as a block code minimum distance decoder. The results of applying this model to the Escherichia coli K-12 are presented.

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BT - Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings

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Y2 - 13 October 1999 through 16 October 1999

ER -

Coding model for translation in E. coli K-12

Abstract

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ASJC Scopus subject areas

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