CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles

Leif E. Peterson

doi:10.1186/gb-2002-3-7-software0002

CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles

Leif E. Peterson

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Abstract

CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

Original language	English (US)
Article number	software0002.1
Journal	Genome Biology
Volume	3
Issue number	7
DOIs	https://doi.org/10.1186/gb-2002-3-7-software0002
State	Published - Jun 2002
Externally published	Yes

Keywords

Hierarchical Cluster Analysis
Simulated Gene Expression
Size Displacement
Standardize Input Data
Varimax Orthogonal Rotation

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

Access to Document

10.1186/gb-2002-3-7-software0002

Cite this

@article{7c84244fb9aa4888a4b9124929589cbb,

title = "CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles",

abstract = "CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.",

keywords = "Hierarchical Cluster Analysis, Simulated Gene Expression, Size Displacement, Standardize Input Data, Varimax Orthogonal Rotation",

author = "Peterson, {Leif E.}",

note = "Publisher Copyright: {\textcopyright} 2002, Peterson, licensee BioMed Central Ltd.",

year = "2002",

month = jun,

doi = "10.1186/gb-2002-3-7-software0002",

language = "English (US)",

volume = "3",

journal = "Genome Biology",

issn = "1474-7596",

publisher = "BioMed Central Ltd.",

number = "7",

}

TY - JOUR

T1 - CLUSFAVOR 5.0

T2 - hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles

AU - Peterson, Leif E.

PY - 2002/6

Y1 - 2002/6

N2 - CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

AB - CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

KW - Hierarchical Cluster Analysis

KW - Simulated Gene Expression

KW - Size Displacement

KW - Standardize Input Data

KW - Varimax Orthogonal Rotation

UR - http://www.scopus.com/inward/record.url?scp=0037166427&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0037166427&partnerID=8YFLogxK

U2 - 10.1186/gb-2002-3-7-software0002

DO - 10.1186/gb-2002-3-7-software0002

M3 - Article

C2 - 12184816

AN - SCOPUS:0037166427

SN - 1474-7596

VL - 3

JO - Genome Biology

JF - Genome Biology

IS - 7

M1 - software0002.1

ER -

CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles

Abstract

Keywords

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Cite this