Abstract
CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.
Original language | English (US) |
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Article number | software0002.1 |
Journal | Genome Biology |
Volume | 3 |
Issue number | 7 |
DOIs | |
State | Published - Jun 2002 |
Externally published | Yes |
Keywords
- Hierarchical Cluster Analysis
- Simulated Gene Expression
- Size Displacement
- Standardize Input Data
- Varimax Orthogonal Rotation
ASJC Scopus subject areas
- Ecology, Evolution, Behavior and Systematics
- Genetics
- Cell Biology