CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.

Leif E. Peterson

CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.

Leif E. Peterson

Research output: Contribution to journal › Article

Abstract

CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

Original language	English (US)
Pages (from-to)	SOFTWARE0002
Journal	Genome Biology
Volume	3
Issue number	7
State	Published - Jun 24 2002
Externally published	Yes

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

Access to Document

Fingerprint Dive into the research topics of 'CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.'. Together they form a unique fingerprint.

Cite this

@article{7c84244fb9aa4888a4b9124929589cbb,

title = "CLUSFAVOR 5.0: hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.",

abstract = "CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.",

author = "Peterson, {Leif E.}",

year = "2002",

month = jun,

day = "24",

language = "English (US)",

volume = "3",

pages = "SOFTWARE0002",

journal = "Genome Biology",

issn = "1474-7596",

publisher = "BioMed Central",

number = "7",

}

TY - JOUR

T1 - CLUSFAVOR 5.0

T2 - hierarchical cluster and principal-component analysis of microarray-based transcriptional profiles.

AU - Peterson, Leif E.

PY - 2002/6/24

Y1 - 2002/6/24

N2 - CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

AB - CLUSFAVOR (CLUSter and Factor Analysis with Varimax Orthogonal Rotation) 5.0 standardizes input data; sorts data according to gene-specific coefficient of variation, standard deviation, average and total expression, and Shannon entropy; performs hierarchical cluster analysis using nearest-neighbor, unweighted pair-group method using arithmetic averages (UPGMA), or furthest-neighbor joining methods, and Euclidean, correlation, or jack-knife distances; and performs principal-component analysis.

UR - http://www.scopus.com/inward/record.url?scp=0037166427&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0037166427&partnerID=8YFLogxK

M3 - Article

C2 - 12184816

AN - SCOPUS:0037166427

VL - 3

SP - SOFTWARE0002

JO - Genome Biology

JF - Genome Biology

SN - 1474-7596

IS - 7

ER -