Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo.

Eleni Zacharia; Maria Bondesson; Anne Riu; Nicole A. Ducharme; Jan-Ake Gustafsson; Ioannis A. Kakadiaris

Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo.

Eleni Zacharia, Maria Bondesson, Anne Riu, Nicole A. Ducharme, Jan-Ake Gustafsson, Ioannis A. Kakadiaris

Research output: Contribution to journal › Article › peer-review

Abstract

Biological inferences about the toxicity of chemicals reached during experiments on the zebrafish Dharma embryo can be greatly affected by the analysis of the time-lapse microscopy images depicting the embryo. Among the stages of image analysis, automatic and accurate segmentation of the Dharma embryo is the most crucial and challenging. In this paper, an accurate and automatic segmentation approach for the segmentation of the Dharma embryo data obtained by fluorescent time-lapse microscopy is proposed. Experiments performed in four stacks of 3D images over time have shown promising results.

Original language	English
Pages (from-to)	8082-8085
Number of pages	4
Journal	Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference
Volume	2011
State	Published - Dec 1 2011

ASJC Scopus subject areas

Computer Vision and Pattern Recognition
Signal Processing
Biomedical Engineering
Health Informatics

Cite this

Zacharia, E., Bondesson, M., Riu, A., Ducharme, N. A., Gustafsson, J.-A., & Kakadiaris, I. A. (2011). Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, 2011, 8082-8085.

Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. / Zacharia, Eleni; Bondesson, Maria; Riu, Anne et al.
In: Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 2011, 01.12.2011, p. 8082-8085.

Research output: Contribution to journal › Article › peer-review

Zacharia, E, Bondesson, M, Riu, A, Ducharme, NA, Gustafsson, J-A & Kakadiaris, IA 2011, 'Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo.', Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, vol. 2011, pp. 8082-8085.

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AU - Kakadiaris, Ioannis A.

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Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo.

Abstract

ASJC Scopus subject areas

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