Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo

Eleni Zacharia; Maria Bondesson; Anne Riu; Nicole A. Ducharme; Jan-Ake Gustafsson; Ioannis A. Kakadiaris

doi:10.1109/IEMBS.2011.6091993

Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo

Eleni Zacharia, Maria Bondesson, Anne Riu, Nicole A. Ducharme, Jan-Ake Gustafsson, Ioannis A. Kakadiaris

Houston Methodist

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Biological inferences about the toxicity of chemicals reached during experiments on the zebrafish Dharma embryo can be greatly affected by the analysis of the time-lapse microscopy images depicting the embryo. Among the stages of image analysis, automatic and accurate segmentation of the Dharma embryo is the most crucial and challenging. In this paper, an accurate and automatic segmentation approach for the segmentation of the Dharma embryo data obtained by fluorescent time-lapse microscopy is proposed. Experiments performed in four stacks of 3D images over time have shown promising results.

Original language	English
Title of host publication	Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
Pages	8082-8085
Number of pages	4
DOIs	https://doi.org/10.1109/IEMBS.2011.6091993
State	Published - Dec 26 2011
Event	33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011 - Boston, MA, United States Duration: Aug 30 2011 → Sep 3 2011

Other

Other	33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011
Country/Territory	United States
City	Boston, MA
Period	8/30/11 → 9/3/11

ASJC Scopus subject areas

Computer Vision and Pattern Recognition
Signal Processing
Biomedical Engineering
Health Informatics

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10.1109/IEMBS.2011.6091993

Cite this

Zacharia, E., Bondesson, M., Riu, A., Ducharme, N. A., Gustafsson, J.-A., & Kakadiaris, I. A. (2011). Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. In Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS (pp. 8082-8085). Article 6091993 https://doi.org/10.1109/IEMBS.2011.6091993

Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. / Zacharia, Eleni; Bondesson, Maria; Riu, Anne et al.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. 2011. p. 8082-8085 6091993.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Zacharia, E, Bondesson, M, Riu, A, Ducharme, NA, Gustafsson, J-A & Kakadiaris, IA 2011, Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo. in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS., 6091993, pp. 8082-8085, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011, Boston, MA, United States, 8/30/11. https://doi.org/10.1109/IEMBS.2011.6091993

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Automatic segmentation of time-lapse microscopy images depicting a live Dharma embryo

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