Automated quantitation of zebrafish somites in high-throughput screens

Jianfeng Lu, Tianming Liu, Jingxín Nie, Jie Ding, Jinmin Zhu, Jingyu Yang, Lei Guo, Weiming Xia, Stephen T.C. Wong

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Abstract

With the availability of high-throughput imaging machines and large number of zebrafish embryos, zebrafish is by far one of the most cost-effective vertebrate systems for high-throughput or high-content screens. With the tremendous amount of images generated from large numbers of zebrafish, computerized image analysis for accurate and efficient data interpretation becomes essential. This paper presents an automated algorithm for quantitation of zebrafish somite in high-throughput screen. Preliminary evaluation results are shown to demonstrate the performance of the algorithm, This algorithm has been integrated into our CBI Platform.

Original languageEnglish (US)
Title of host publication2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
DOIs
StatePublished - 2006
Event2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 - Bethesda, MD, United States
Duration: Jul 13 2006Jul 14 2006

Publication series

Name2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Other

Other2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
CountryUnited States
CityBethesda, MD
Period7/13/067/14/06

ASJC Scopus subject areas

  • Health(social science)
  • Assessment and Diagnosis
  • Medicine(all)
  • Health Information Management
  • Electrical and Electronic Engineering
  • Human-Computer Interaction
  • Computer Science Applications
  • Signal Processing

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