Assignment of 115 genes from HSA9 and HSA14 to SSC1q by RH mapping to generate a dense human-pig comparative map

H. Yasue; M. Kitajima; Y. Tamada; A. H. Rezaeian; H. Hiraiwa; T. Hayashi; T. Shimogiri

doi:10.1111/j.1365-2052.2008.01716.x

Assignment of 115 genes from HSA9 and HSA14 to SSC1q by RH mapping to generate a dense human-pig comparative map

H. Yasue, M. Kitajima, Y. Tamada, A. H. Rezaeian, H. Hiraiwa, T. Hayashi, T. Shimogiri

Academic Institute

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

A large number of significant QTL for economically important traits including average daily gain have been located on SSC1q, which, as shown by chromosome painting, corresponds to four human chromosomes (HSA9, 14, 15 and 18). To provide a comprehensive comparative map for efficient selection of candidate genes, 81 and 34 genes localized on HSA9 and HSA14 respectively were mapped to SSC1q using a porcine 7000-rad radiation hybrid panel (IMpRH). This study, together with the cytogenetic map (http://www2.toulouse. inra.fr/lgc/pig/cyto/genmar/htm/lGM.HTM), demonstrates that SSClq2.1-q2.13 corresponds to the region ranging from 44.6 to 63.2 Mb on HSA14q21.1-q23.1, the region from 86.5 to 86.8 Mb on HSA15q24-q25, the region from 0.9 to 27.2 Mb on HSA9p24.3-p21, the region from 35.1 to 38.0 Mb on HSA9pl3, the region from 70.3 to 79.3 Mb on HSA9ql3-q21 and the region from 96.4 to 140.0 Mb on HSA9q22.3-q34. The conserved synteny between HSA9 and SSC1q is interrupted by at least six sites, and the synteny between HSA14 and SSC1q is interrupted by at least one site.

Original language	English (US)
Pages (from-to)	301-305
Number of pages	5
Journal	Animal Genetics
Volume	39
Issue number	3
DOIs	https://doi.org/10.1111/j.1365-2052.2008.01716.x
State	Published - Jun 2008

Keywords

Comparative mapping
High-resolution mapping
Human
Mouse
Pig

ASJC Scopus subject areas

Animal Science and Zoology
Genetics

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10.1111/j.1365-2052.2008.01716.x

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title = "Assignment of 115 genes from HSA9 and HSA14 to SSC1q by RH mapping to generate a dense human-pig comparative map",

abstract = "A large number of significant QTL for economically important traits including average daily gain have been located on SSC1q, which, as shown by chromosome painting, corresponds to four human chromosomes (HSA9, 14, 15 and 18). To provide a comprehensive comparative map for efficient selection of candidate genes, 81 and 34 genes localized on HSA9 and HSA14 respectively were mapped to SSC1q using a porcine 7000-rad radiation hybrid panel (IMpRH). This study, together with the cytogenetic map (http://www2.toulouse. inra.fr/lgc/pig/cyto/genmar/htm/lGM.HTM), demonstrates that SSClq2.1-q2.13 corresponds to the region ranging from 44.6 to 63.2 Mb on HSA14q21.1-q23.1, the region from 86.5 to 86.8 Mb on HSA15q24-q25, the region from 0.9 to 27.2 Mb on HSA9p24.3-p21, the region from 35.1 to 38.0 Mb on HSA9pl3, the region from 70.3 to 79.3 Mb on HSA9ql3-q21 and the region from 96.4 to 140.0 Mb on HSA9q22.3-q34. The conserved synteny between HSA9 and SSC1q is interrupted by at least six sites, and the synteny between HSA14 and SSC1q is interrupted by at least one site.",

keywords = "Comparative mapping, High-resolution mapping, Human, Mouse, Pig",

author = "H. Yasue and M. Kitajima and Y. Tamada and Rezaeian, {A. H.} and H. Hiraiwa and T. Hayashi and T. Shimogiri",

year = "2008",

month = jun,

doi = "10.1111/j.1365-2052.2008.01716.x",

language = "English (US)",

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AU - Yasue, H.

AU - Kitajima, M.

AU - Tamada, Y.

AU - Rezaeian, A. H.

AU - Hiraiwa, H.

AU - Hayashi, T.

AU - Shimogiri, T.

PY - 2008/6

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N2 - A large number of significant QTL for economically important traits including average daily gain have been located on SSC1q, which, as shown by chromosome painting, corresponds to four human chromosomes (HSA9, 14, 15 and 18). To provide a comprehensive comparative map for efficient selection of candidate genes, 81 and 34 genes localized on HSA9 and HSA14 respectively were mapped to SSC1q using a porcine 7000-rad radiation hybrid panel (IMpRH). This study, together with the cytogenetic map (http://www2.toulouse. inra.fr/lgc/pig/cyto/genmar/htm/lGM.HTM), demonstrates that SSClq2.1-q2.13 corresponds to the region ranging from 44.6 to 63.2 Mb on HSA14q21.1-q23.1, the region from 86.5 to 86.8 Mb on HSA15q24-q25, the region from 0.9 to 27.2 Mb on HSA9p24.3-p21, the region from 35.1 to 38.0 Mb on HSA9pl3, the region from 70.3 to 79.3 Mb on HSA9ql3-q21 and the region from 96.4 to 140.0 Mb on HSA9q22.3-q34. The conserved synteny between HSA9 and SSC1q is interrupted by at least six sites, and the synteny between HSA14 and SSC1q is interrupted by at least one site.

AB - A large number of significant QTL for economically important traits including average daily gain have been located on SSC1q, which, as shown by chromosome painting, corresponds to four human chromosomes (HSA9, 14, 15 and 18). To provide a comprehensive comparative map for efficient selection of candidate genes, 81 and 34 genes localized on HSA9 and HSA14 respectively were mapped to SSC1q using a porcine 7000-rad radiation hybrid panel (IMpRH). This study, together with the cytogenetic map (http://www2.toulouse. inra.fr/lgc/pig/cyto/genmar/htm/lGM.HTM), demonstrates that SSClq2.1-q2.13 corresponds to the region ranging from 44.6 to 63.2 Mb on HSA14q21.1-q23.1, the region from 86.5 to 86.8 Mb on HSA15q24-q25, the region from 0.9 to 27.2 Mb on HSA9p24.3-p21, the region from 35.1 to 38.0 Mb on HSA9pl3, the region from 70.3 to 79.3 Mb on HSA9ql3-q21 and the region from 96.4 to 140.0 Mb on HSA9q22.3-q34. The conserved synteny between HSA9 and SSC1q is interrupted by at least six sites, and the synteny between HSA14 and SSC1q is interrupted by at least one site.

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KW - High-resolution mapping

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KW - Pig

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Assignment of 115 genes from HSA9 and HSA14 to SSC1q by RH mapping to generate a dense human-pig comparative map

Abstract

Keywords

ASJC Scopus subject areas

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