A genomic day in the life of a clinical microbiology laboratory

S. Wesley Long; Dawn Williams; Chandni Valson; Concepcion C. Cantu; Patricia Cernoch; James M. Musser; Randall J. Olsen

doi:10.1128/JCM.03237-12

A genomic day in the life of a clinical microbiology laboratory

S. Wesley Long, Dawn Williams, Chandni Valson, Concepcion C. Cantu, Patricia Cernoch, James M. Musser, Randall J. Olsen

Research output: Contribution to journal › Article › peer-review

60 Scopus citations

Abstract

Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day.

Original language	English (US)
Pages (from-to)	1272-1277
Number of pages	6
Journal	Journal of Clinical Microbiology
Volume	51
Issue number	4
DOIs	https://doi.org/10.1128/JCM.03237-12
State	Published - Apr 2013

ASJC Scopus subject areas

Microbiology (medical)

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10.1128/JCM.03237-12

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title = "A genomic day in the life of a clinical microbiology laboratory",

abstract = "Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day.",

author = "Long, \{S. Wesley\} and Dawn Williams and Chandni Valson and Cantu, \{Concepcion C.\} and Patricia Cernoch and Musser, \{James M.\} and Olsen, \{Randall J.\}",

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AU - Cantu, Concepcion C.

AU - Cernoch, Patricia

AU - Musser, James M.

AU - Olsen, Randall J.

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AB - Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day.

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A genomic day in the life of a clinical microbiology laboratory

Abstract

ASJC Scopus subject areas

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