Research outputs

  1. 2019
  2. Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis

    Kachroo, P., Eraso, J. M., Beres, S. B., Olsen, R. J., Zhu, L., Nasser, W., Bernard, P. E., Cantu, C. C., Saavedra, M. O., Arredondo, M. J., Strope, B., Do, H., Kumaraswami, M., Vuopio, J., Gröndahl-Yli-Hannuksela, K., Kristinsson, K. G., Gottfredsson, M., Pesonen, M., Pensar, J., Davenport, E. R. & 11 othersClark, A. G., Corander, J., Caugant, D. A., Gaini, S., Magnussen, M. D., Kubiak, S. L., Nguyen, H. A. T., Long, S. W., Porter, A. R., DeLeo, F. R. & Musser, J. M., Mar 1 2019, In : Nature Genetics. 51, 3, p. 548-559 12 p.

    Research output: Contribution to journalArticle

  3. Using machine learning to predict antimicrobial MICs and associated genomic features for nontyphoidal Salmonella

    Nguyen, M., Long, S. W., McDermott, P. F., Olsen, R. J., Olson, R., Stevens, R. L., Tyson, G. H., Zhao, S. & Davisa, J. J., Feb 1 2019, In : Journal of Clinical Microbiology. 57, 2, e01260.

    Research output: Contribution to journalArticle

  4. Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas

    Long, S. W., Olsen, R. J., Nguyen, H. A. T., Saavedra, M. O. & Musser, J. M., Jan 1 2019, In : Microbiology Resource Announcements. 8, 25, e00532-19.

    Research output: Contribution to journalArticle

  5. 2018
  6. RocA Has Serotype-Specific Gene Regulatory and Pathogenesis Activities in Serotype M28 Group A Streptococcus

    Bernard, P. E., Kachroo, P., Zhu, L., Beres, S. B., Eraso, J. M., Kajani, Z., Long, S. W., Musser, J. M. & Olsen, R. J., Nov 1 2018, In : Infection and immunity. 86, 11, e00467-18.

    Research output: Contribution to journalArticle

  7. Chlorhexidine bathing and Clostridium difficile infection in a surgical intensive care unit

    Bui, L. N., Swan, J. T., Shirkey, B. A., Olsen, R. J., Long, S. W. & Graviss, E. A., Aug 1 2018, In : The Journal of surgical research. 228, p. 107-111 5 p.

    Research output: Contribution to journalArticle

  8. Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumonia

    Nguyen, M., Brettin, T., Long, S. W., Musser, J. M., Olsen, R. J., Olson, R., Shukla, M., Stevens, R. L., Xia, F., Yoo, H. & Davis, J. J., Jan 11 2018, In : Scientific Reports. 8, 1, 421.

    Research output: Contribution to journalArticle

  9. Real-time Communication with Health Care Providers through an Online Respiratory Pathogen Laboratory Report

    Christensen, P. A., Olsen, R. J., Perez, K. K., Cernoch, P. L. & Long, S. W., Jan 1 2018, In : Open Forum Infectious Diseases. 5, 12

    Research output: Contribution to journalArticle

  10. 2017
  11. Houston Methodist Variant Viewer: An Application to Support Clinical Laboratory Interpretation of Next-generation Sequencing Data for Cancer

    Christensen, P. A., Ni, Y., Bao, F., Hendrickson, H. L., Greenwood, M., Thomas, J. S., Long, S. W. & Olsen, R. J., Nov 2017, In : Journal of Pathology Informatics. 8, 1, 5 p., A25.

    Research output: Contribution to journalArticle

  12. Whole-genome sequencing of a human clinical isolate of the novel species Klebsiella quasivariicola sp. nov.

    Long, S. W., Linson, S. E., Saavedra, M. O., Cantu, C., Davis, J. J., Brettin, T. & Olsen, R. J., Oct 1 2017, In : Genome Announcements. 5, 42, e01057-17.

    Research output: Contribution to journalArticle

  13. Wholegenome sequencing of human clinical Klebsiella pneumoniae isolates reveals misidentification and misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae

    Long, S. W., Linson, S. E., Saavedra, M. O., Cantu, C., Davis, J. J., Brettin, T. & Olsen, R. J., Jul 1 2017, In : mSphere. 2, 4, e00290-17.

    Research output: Contribution to journalArticle

  14. RecutClub.com: An Open Source, Whole Slide Image-based Pathology Education System

    Christensen, P. A., Lee, N. E., Thrall, M. J., Powell, S. Z., Chevez-Barrios, P. & Long, S. W., 2017, In : Journal of Pathology Informatics. 8, 10, p. 10

    Research output: Contribution to journalArticle

  15. 2015
  16. Comparative whole genome sequencing of community-associated methicillin-resistant Staphylococcus aureus sequence type 8 from primary care clinics in a Texas community

    Lee, G. C., Long, S. W., Musser, J. M., Beres, S. B., Olsen, R. J., Dallas, S. D., Nunez, Y. O. & Frei, C. R., Feb 1 2015, In : Pharmacotherapy. 35, 2, p. 220-228 9 p.

    Research output: Contribution to journalArticle

  17. Improving positive blood culture removal time significantly decreases total processing time

    Salazar, E., Divatia, M. K., Cernoch, P. L., Olsen, R. J., Long, S. W., Land, G. A., Davis, J. R. & Musser, J. M., Feb 1 2015, In : Archives of Pathology and Laboratory Medicine. 139, 2, p. 199-203 5 p.

    Research output: Contribution to journalArticle

  18. The majority of 9,729 group A streptococcus strains causing disease secrete SpeB cysteine protease: Pathogenesis implications

    Olsen, R. J., Raghuram, A., Cantu, C., Hartman, M. H., Jimenez, F. E., Lee, S., Ngo, A., Rice, K. A., Saddington, D., Spillman, H., Valson, C., Flores, A. R., Beres, S. B., Long, S. W., Nasser, W. & Musser, J. M., 2015, In : Infection and Immunity. 83, 12, p. 4750-4758 9 p.

    Research output: Contribution to journalArticle

  19. 2014
  20. PBP2a mutations causing high-level ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates

    Long, S. W., Olsen, R. J., Mehta, S. C., Palzkill, T., Cernoch, P. L., Perez, K. K., Musick, W. L., Rosato, A. E. & Musser, J. M., Nov 1 2014, In : Antimicrobial agents and chemotherapy. 58, 11, p. 6668-6674 7 p.

    Research output: Contribution to journalArticle

  21. Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences

    Nasser, W., Beres, S. B., Olsen, R. J., Dean, M. A., Rice, K. A., Long, S. W., Kristinsson, K. G., Gottfredsson, M., Vuopio, J., Raisanen, K., Caugant, D. A., Steinbakk, M., Low, D. E., McGeer, A., Darenberg, J., Henriques-Normark, B., Van Beneden, C. A., Hoffmann, S. & Musser, J. M., Apr 29 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 17

    Research output: Contribution to journalArticle

  22. Clinical laboratory response to a mock outbreak of invasive bacterial infections: A preparedness study

    Olsen, R. J., Fittipaldi, N., Kachroo, P., Sanson, M. A., Long, S. W., Como-Sabetti, K. J., Valson, C., Cantu, C., Lynfield, R., Van Beneden, C., Beres, S. B. & Musser, J. M., Jan 1 2014, In : Journal of Clinical Microbiology. 52, 12, p. 4210-4216 7 p.

    Research output: Contribution to journalArticle

  23. Identification of point mutations in clinical staphylococcus aureus strains that produce small-colony variants auxotrophic for menadione

    Dean, M. A., Olsen, R. J., Long, S. W., Rosato, A. E. & Musser, J. M., Jan 1 2014, In : Infection and Immunity. 82, 4, p. 1600-1605 6 p.

    Research output: Contribution to journalArticle

  24. 2013
  25. A genomic day in the life of a clinical microbiology laboratory

    Long, S. W., Williams, D., Valson, C., Cantu, C. C., Cernoch, P., Musser, J. M. & Olsen, R. J., Apr 1 2013, In : Journal of Clinical Microbiology. 51, 4, p. 1272-1277 6 p.

    Research output: Contribution to journalArticle

  26. 2012
  27. Bacterial genomics in infectious disease and the clinical pathology laboratory

    Olsen, R. J., Long, S. W. & Musser, J. M., Nov 1 2012, In : Archives of Pathology and Laboratory Medicine. 136, 11, p. 1414-1422 9 p.

    Research output: Contribution to journalArticle

  28. Strategy for rapid identification and antibiotic susceptibility testing of gram-negative bacteria directly recovered from positive blood cultures using the Bruker MALDI biotyper and the BD phoenix system

    Wimmer, J. L., Long, S. W., Cernoch, P., Land, G. A., Davis, J. R., Musser, J. M. & Olsen, R. J., Jul 1 2012, In : Journal of Clinical Microbiology. 50, 7, p. 2452-2454 3 p.

    Research output: Contribution to journalArticle

  29. 2011
  30. Rapidly progressive, fatal, inhalation anthrax-like infection in a human: Case report, pathogen genome sequencing, pathology, and coordinated response

    Wright, A. M., Beres, S. B., Consamus, E. N., Long, S. W., Flores, A. R., Barrios, R., Richter, G. S., Oh, S. Y., Garufi, G., Maier, H., Drews, A., Stockbauer, K. E., Cernoch, P., Schneewind, O., Olsen, R. J. & Musser, J. M., Nov 1 2011, In : Archives of Pathology and Laboratory Medicine. 135, 11, p. 1447-1459 13 p.

    Research output: Contribution to journalArticle

  31. 2007
  32. A preliminary investigation of Ehrlichia species in ticks, humans, dogs, and capybaras from Brazil

    Labruna, M. B., McBride, J. W., Camargo, L. M. A., Aguiar, D. M., Yabsley, M. J., Davidson, W. R., Stromdahl, E. Y., Williamson, P. C., Stich, R. W., Long, S. W., Camargo, E. P. & Walker, D. H., Jan 31 2007, In : Veterinary Parasitology. 143, 2, p. 189-195 7 p.

    Research output: Contribution to journalArticle

  33. 2005
  34. Overcoming barriers to the transformation of the genus Ehrlichia.

    Long, S. W., Whitworth, T. J., Walker, D. H. & Yu, X. J., Dec 1 2005, In : Annals of the New York Academy of Sciences. 1063, p. 403-410 8 p.

    Research output: Contribution to journalArticle

  35. 2004
  36. Ehrlichia prevalence in Amblyomma americanum, Central Texas [11]

    Long, S. W., Pound, J. M. & Yu, X. J., Jul 1 2004, In : Emerging infectious diseases. 10, 7, p. 1342-1343 2 p.

    Research output: Contribution to journalArticle

  37. 2003
  38. Evaluation of Transovarial Transmission and Transmissibility of Ehrlichia chaffeensis (Rickettsiales: Anaplasmataceae) in Amblyomma americanum (Acari: Ixodidae)

    Long, S. W., Zhang, X., Zhang, J., Ruble, R. P., Teel, P. & Yu, X. J., Nov 1 2003, In : Journal of Medical Entomology. 40, 6, p. 1000-1004 5 p.

    Research output: Contribution to journalArticle

  39. Experimental Ehrlichia chaffeensis infection in beagles

    Zhang, X. F., Zhang, J. Z., Long, S. W., Ruble, R. P. & Yu, X. J., Nov 1 2003, In : Journal of Medical Microbiology. 52, 11, p. 1021-1026 6 p.

    Research output: Contribution to journalArticle

  40. 2002
  41. Antigenic variation of Ehrlichia chaffeensis resulting from differential expression of the 28-kilodalton protein gene family

    Long, S. W., Zhang, X. F., Qi, H., Standaert, S., Walker, D. H. & Yu, X. J., Apr 3 2002, In : Infection and Immunity. 70, 4, p. 1824-1831 8 p.

    Research output: Contribution to journalArticle

ID: 2277061