Research outputs

  1. 2019
  2. A Continuum of Interfaces to Engage Surgical Staff in Efficient Collaboration

    Rambourg, J., Gaspard-Boulinc, H., Conversy, S. & Garbey, M., Jul 1 2019, In : Journal of Medical Systems. 43, 7, 184.

    Research output: Contribution to journalArticle

  3. A Multiscale Model of Atherosclerotic Plaque Development: Toward a Coupling Between an Agent-Based Model and CFD Simulations

    Corti, A., Casarin, S., Chiastra, C., Colombo, M., Migliavacca, F. & Garbey, M., Jan 1 2019, Computational Science – ICCS 2019 - 19th International Conference, Proceedings. Rodrigues, J. M. F., Cardoso, P. J. S., Monteiro, J., Lam, R., Krzhizhanovskaya, V. V., Lees, M. H., Sloot, P. M. A. & Dongarra, J. J. (eds.). Springer-Verlag, p. 410-423 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11539 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. Advanced Image Processing Algorithms for Breast Cancer Decision Support and Information Management System

    García, M. I., López-Linares, K., Rampun, A., Scotney, B. W., Morrow, P. J., Salmon, R., Garbey, M., Audersch, S., Azpíroz, M., Romero, J. A., Belloch, V., Santabárbara, J. M. & Macia, I., Jan 1 2019, Innovation in Medicine and Healthcare Systems, and Multimedia - Proceedings of KES-InMed 2019 and KES-IIMSS 2019 Conferences. Zimmermann, A., Chen, Y-W., Howlett, R. J. & Jain, L. C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 147-156 10 p. (Smart Innovation, Systems and Technologies; vol. 145).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  5. 2018
  6. Welcome OnBoard: An Interactive Large Surface Designed for Teamwork and Flexibility in Surgical Flow Management

    Rambourg, J., Gaspard-Boulinc, H., Conversy, S. & Garbey, M., Nov 19 2018, ISS 2018 - Proceedings of the 2018 ACM International Conference on Interactive Surfaces and Spaces. Association for Computing Machinery, Inc, p. 5-17 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  7. A twofold usage of an agent-based model of vascular adaptation to design clinical experiments

    Casarin, S., Berceli, S. A. & Garbey, M., Nov 1 2018, In : Journal of Computational Science. 29, p. 59-69 11 p.

    Research output: Contribution to journalArticle

  8. Augmenting a wireless portable ultrasound imaging with a real-time hemodynamics solver

    Lesage, A. C. & Garbey, M., Jan 8 2018, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 223-229 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. Global laparoscopy positioning system with a smart trocar

    Joerger, G., Huang, A., Bass, B., Dunkin, B. & Garbey, M., Jan 8 2018, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 359-366 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. A computational model-based framework to plan clinical experiments – an application to vascular adaptation biology

    Casarin, S., Berceli, S. A. & Garbey, M., 2018, Computational Science – ICCS 2018 - 18th International Conference, Proceedings. Springer Verlag, Vol. 10860 LNCS. p. 352-362 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10860 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. A versatile hybrid agent-based, particle and partial differential equations method to analyze vascular adaptation

    Garbey, M., Casarin, S. & Berceli, S. A., 2018, (Accepted/In press) In : Biomechanics and Modeling in Mechanobiology.

    Research output: Contribution to journalArticle

  12. A Versatile Hybrid Agent-Based, Particle and Partial Differential Equations Method to Analyze Vascular Adaptation

    Garbey, M., Casarin, S. & Berceli, S., 2018, Computational Science – ICCS 2018 - 18th International Conference, Proceedings. Springer Verlag, Vol. 10861 LNCS. p. 856-868 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10861 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  13. Multimodal imaging of the breast to retrieve the reference state in the absence of gravity using finite element modeling

    Salmon, R., Nguyen, T. C., Moore, L. W., Bass, B. L. & Garbey, M., 2018, Innovation in Medicine and Healthcare 2017 -: Proceedings of the 5th KES International Conference on Innovation in Medicine and Healthcare, KES-InMed 2017. Springer Science and Business Media Deutschland GmbH, Vol. 71. p. 254-263 10 p. (Smart Innovation, Systems and Technologies; vol. 71).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  14. 2017
  15. Linking gene dynamics to vascular hyperplasia - Toward a predictive model of vein graft adaptation

    Casarin, S., Berceli, S. A. & Garbey, M., Nov 1 2017, In : PLoS ONE. 12, 11, p. e0187606 e0187606.

    Research output: Contribution to journalArticle

  16. Multiscale Understanding of Vascular Adaptation: The Vein Graft Model

    Garbey, M., Casarin, S. & Berceli, S. A., Nov 1 2017, In : Siam News. 50

    Research output: Contribution to journalArticle

  17. Augmenting a wireless portable Ultrasound Imaging with a real‐time hemodynamics solver

    Lesage, A. C. & Garbey, M., Oct 23 2017, IEEE International Conference on Bioinformatics and Bioengineering. Institute of Electrical and Electronics Engineers Inc., 30

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  18. Global Laparoscopy Positioning System with a Smart Trocar (82)

    Joerger, G., Huang, A. Y., Bass, B. L., Dunkin, B. J. & Garbey, M., Oct 23 2017, 2017, IEEE BIBE: IEEE International Conference on Bioinformatics and Bioengineering. Institute of Electrical and Electronics Engineers Inc.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  19. Vascular Adaptation: Pattern Formation and Cross Validation between an Agent Based Model and a Dynamical System

    Garbey, M., Casarin, S. & Berceli, S. A., Sep 21 2017, In : Journal of Theoretical Biology. 429, p. 149-163 15 p.

    Research output: Contribution to journalArticle

  20. A method for going from 2D laparoscope to 3D acquisition of surface landmarks by a novel computer vision approach

    Garbey, M., Nguyen, T. B., Huang, A. Y., Fikfak, V. & Dunkin, B. J., Aug 31 2017, (Accepted/In press) In : International Journal of Computer Assisted Radiology and Surgery. p. 1-14 14 p.

    Research output: Contribution to journalArticle

  21. Measuring mental workload with EEG+fNIRS

    Aghajani, H., Garbey, M. & Omurtag, A., Jul 14 2017, In : Frontiers in Human Neuroscience. 11, 359.

    Research output: Contribution to journalArticle

  22. A robust construction algorithm of the centerline skeleton for complex aortic vascular structure using computational fluid dynamics

    Touati, J., Bologna, M., Schwein, A., Migliavacca, F. & Garbey, M., Jul 1 2017, In : Computers in Biology and Medicine. 86, p. 6-17 12 p.

    Research output: Contribution to journalArticle

  23. Re-engineer operating room data acquisition and transmission for improving surgical suite awareness and management

    Joerger, G., Rambourg, J., Garbey, M., Conversy, S. & Gaspard-Boulinc, H., Apr 11 2017, 2017 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 205-208 4 p. 7897241

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  24. Optimal Flow Conditions of TracheoBronchial Model to Reengineer Lung Structures

    Garbey, M., Casarin, S., Aletti, F. & Baselli, G., Mar 10 2017, In : Acta Mechanica Sinica/Lixue Xuebao. p. 1-11 11 p.

    Research output: Contribution to journalArticle

  25. The SmartOR: a distributed sensor network to improve operating room efficiency

    Huang, A. Y., Joerger, G., Fikfak, V., Salmon, R., Dunkin, B. J., Bass, B. L. & Garbey, M., Feb 24 2017, (Accepted/In press) In : Surgical Endoscopy and Other Interventional Techniques. p. 1-6 6 p.

    Research output: Contribution to journalArticle

  26. Linking Gene Dynamics to Intimal Hyperplasia - A Predictive Model of Vein Graft Adaptation

    Casarin, S., Berceli, S. A. & Garbey, M., 2017, In : Procedia Computer Science. 108, p. 1842-1851 10 p.

    Research output: Contribution to journalArticle

  27. Multiscale Modeling of Surgical Flow in a Large Operating Room Suite: Understanding the Mechanism of Accumulation of Delays in Clinical Practice

    Garbey, M., Joerger, G., Rambourg, J., Dunkin, B. J. & Bass, B. L., 2017, In : Procedia Computer Science. 108, p. 1863-1872 10 p.

    Research output: Contribution to journalArticle

  28. 2016
  29. Esophageal stent migration: Testing few hypothesis with a simplified mathematical model

    Garbey, M., Salmon, R., Fikfak, V. & Clerc, C. O., Dec 1 2016, In : Computers in Biology and Medicine. 79, p. 259-265 7 p.

    Research output: Contribution to journalArticle

  30. Collaboration within the surgical suite: BoardProbe design for and with the surgical team

    Rambourg, J., Conversy, S., Garbey, M. & Gaspard-Boulinc, H., Oct 25 2016, IHM 2016 - Actes de la 28ieme Conference Francophone sur l'Interaction Homme-Machine. Association for Computing Machinery, Inc, p. 271-277 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  31. Multi-scale Modeling of the Cardiovascular System: Disease Development, Progression, and Clinical Intervention

    Zhang, Y., Barocas, V. H., Berceli, S. A., Clancy, C. E., Eckmann, D. M., Garbey, M., Kassab, G. S., Lochner, D. R., McCulloch, A. D., Tran-Son-Tay, R. & Trayanova, N. A., Sep 2016, In : Annals of Biomedical Engineering. 44, 9, p. 2642-60 19 p.

    Research output: Contribution to journalArticle

  32. Image-guided simulation of tissue deformation using a mechanical model on a surgical application

    Nguyen, T. B., Huang, A. Y., Fikfak, V., Dunkin, B. J. & Garbey, M., Jul 23 2016, In : Computer Methods in Biomechanics and Biomedical Engineering. p. 1-9 9 p.

    Research output: Contribution to journalArticle

  33. The SmartOR: A Distributed Sensor Network to Improve Operating Room (OR) Efficiency

    Garbey, M., Dunkin, B., Bass, B. L., Joerger, G., Salmon, R., Fikfak, V. & Huang, A. Y., Mar 1 2016, (Accepted/In press) Surgical Endoscopy: And Other Interventional Techniques Official Journal of the Society of American Gastrointestinal and Endoscopic Surgeons (SAGES) and European Association for Endoscopic Surgery (EAES). Supplement 1 ed. Springer US, Vol. 30. p. S257 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  34. 2015
  35. A robust and non-obtrusive automatic event tracking system for operating room management to improve patient care

    Huang, A. Y., Joerger, G., Salmon, R., Dunkin, B., Sherman, V., Bass, B. L. & Garbey, M., Oct 30 2015, In : Surgical endoscopy.

    Research output: Contribution to journalArticle

  36. A multiscale computational framework to understand vascular adaptation

    Garbey, M., Rahman, M. & Berceli, S., May 1 2015, In : Journal of Computational Science. 8, p. 32-47 16 p.

    Research output: Contribution to journalArticle

  37. A Transdisciplinary Approach to Improve Patient Care

    Garbey, M., Collin, T. & Saut, O., May 1 2015, In : Siam News.

    Research output: Contribution to journalArticle

  38. Interrogating a multifactorial model of breast conserving therapy with clinical data

    Salmon, R., Garbey, M., Moore, L. W. & Bass, B. L., Apr 23 2015, In : PLoS ONE. 10, 4, e0125006.

    Research output: Contribution to journalArticle

  39. A Smart Trocar for automatic tool recognition in laparoscopic surgery

    Toti, G., Garbey, M., Sherman, V., Bass, B. L. & Dunkin, B. J., Feb 21 2015, In : Surgical Innovation. 22, 1, p. 77-82 6 p.

    Research output: Contribution to journalArticle

  40. Deriving indicators for breast conserving surgery using finite element analysis

    Thanoon, D., Garbey, M. & Bass, B. L., Jan 1 2015, In : Computer Methods in Biomechanics and Biomedical Engineering. 18, 5, p. 533-544 12 p.

    Research output: Contribution to journalArticle

  41. An Intelligent Hospital Operating Room to Improve Patient Health Care

    Garbey, M., Huang, A. Y., Joerger, G., Salmon, R., Kim, J., Sherman, V., Dunkin, B. & Bass, B. L., 2015, In : Journal of Computational Surgery. 2, 1

    Research output: Contribution to journalArticle

  42. Mathematical Models to Predict Intimal Hyperplasia

    Garbey, M., Berceli, S. & Casarin, S., 2015, European Symposium Of Vascular Biomaterials .

    Research output: Chapter in Book/Report/Conference proceedingChapter

  43. Toward predictors of long-term behavior and failure after EVAR: the valuable union of semi-automatic CT scan image analysis and E-science platform?

    Garbey, M., Schwein, A., Kensicher, T., Nguyen, T., Bismuth, J., Berceli, S. & Chafke, N., 2015, European Symposium Of vascular Biomaterials.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. 2014
  45. A road map for computational surgery: challenges and opportunities

    Bass, B. L. & Garbey, M., Jan 10 2014, In : Journal of Computational Surgery.

    Research output: Contribution to journalArticle

  46. Computational modeling of breast conserving surgery (bcs) starting from MRI imaging

    Thanoon, D., Garbey, M. & Bass, B. L., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 67-88 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  47. Computational surgery and dual training: Computing, robotics and imaging

    Garbey, M. (ed.), Bass, B. L. (ed.), Berceli, S. (ed.), Collet, C. (ed.) & Cerveri, P. (ed.), Jan 1 2014, Springer New York. 394 p.

    Research output: Book/ReportBook

  48. Introduction: A road map for computational surgery: Challenges and opportunities

    Bass, B. L. & Garbey, M., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 3-26 24 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  49. Preface

    Garbey, M., Bass, B. L., Berceli, S., Collet, C. & Cerveri, P., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. v-vii

    Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

  50. rule-based simulation of vein graft remodeling

    Hwang, M., Garbey, M., Berceli, S. A. & Tran-Son-Tay, R., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 265-272 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  51. Modeling cervix cancer growth and response to radiation therapy: A validation study using patient volumetric tumor data

    Belfatto, A., Garbey, M., Riboldi, M., Ciardo, D., Cecconi, A., Lazzari, R., Jereczek, B. A., Orecchia, R., Baroni, G. & Cerveri, P., 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. Institute of Electrical and Electronics Engineers Inc., p. 476-479 4 p. 6864406

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  52. Structural blueprint and ontogeny determine the adaptive value of the plastic response to competition in clonal plants: A modelling approach

    Bittebiere, A. K., Garbey, M., Smaoui-Feki, M., Clément, B. & Mony, C., 2014, In : Evolutionary Ecology. 28, 3, p. 573-590 18 p.

    Research output: Contribution to journalArticle

  53. 2013
  54. A dynamical system that describes vein graft adaptation and failure

    Garbey, M. & Berceli, S. A., Nov 7 2013, In : Journal of Theoretical Biology. 336, p. 209-220 12 p.

    Research output: Contribution to journalArticle

  55. Multiscale modeling and distributed computing to predict cosmesis outcome after a lumpectomy

    Garbey, M., Salmon, R., Thanoon, D. & Bass, B. L., Jul 1 2013, In : Journal of Computational Physics. 244, p. 321-335 15 p.

    Research output: Contribution to journalArticle

  56. Reconstructing regulatory networks from the dynamic plasticity of gene expression by mutual information

    Wang, J., Chen, B., Wang, Y., Wang, N., Garbey, M., Tran-Son-Tay, R., Berceli, S. A. & Wu, R., Apr 2013, In : Nucleic acids research. 41, 8

    Research output: Contribution to journalArticle

  57. Rule-Based Model of Vein Graft Remodeling

    Hwang, M., Garbey, M., Berceli, S. A., Wu, R., Jiang, Z. & Tran-Son-Tay, R., Mar 22 2013, In : PLoS ONE. 8, 3, e57822.

    Research output: Contribution to journalArticle

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