Research outputs

  1. 2020
  2. A fully coupled computational fluid dynamics – Agent-based model of atherosclerotic plaque development: Multiscale modeling framework and parameter sensitivity analysis

    Corti, A., Chiastra, C., Colombo, M., Garbey, M., Migliavacca, F. & Casarin, S., Jan 2020, (Accepted/In press) In : Computers in Biology and Medicine.

    Research output: Contribution to journalArticle

  3. 2019
  4. A Continuum of Interfaces to Engage Surgical Staff in Efficient Collaboration

    Rambourg, J., Gaspard-Boulinc, H., Conversy, S. & Garbey, M., Jul 1 2019, In : Journal of Medical Systems. 43, 7, 184.

    Research output: Contribution to journalArticle

  5. A Multiscale Model of Atherosclerotic Plaque Development: Toward a Coupling Between an Agent-Based Model and CFD Simulations

    Corti, A., Casarin, S., Chiastra, C., Colombo, M., Migliavacca, F. & Garbey, M., Jan 1 2019, Computational Science – ICCS 2019 - 19th International Conference, Proceedings. Rodrigues, J. M. F., Cardoso, P. J. S., Monteiro, J., Lam, R., Krzhizhanovskaya, V. V., Lees, M. H., Sloot, P. M. A. & Dongarra, J. J. (eds.). Springer-Verlag, p. 410-423 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11539 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  6. Advanced Image Processing Algorithms for Breast Cancer Decision Support and Information Management System

    García, M. I., López-Linares, K., Rampun, A., Scotney, B. W., Morrow, P. J., Salmon, R., Garbey, M., Audersch, S., Azpíroz, M., Romero, J. A., Belloch, V., Santabárbara, J. M. & Macia, I., Jan 1 2019, Innovation in Medicine and Healthcare Systems, and Multimedia - Proceedings of KES-InMed 2019 and KES-IIMSS 2019 Conferences. Zimmermann, A., Chen, Y-W., Howlett, R. J. & Jain, L. C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 147-156 10 p. (Smart Innovation, Systems and Technologies; vol. 145).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  7. Computing patient-specific hemodynamics in stented femoral artery models obtained from computed tomography using a validated 3D reconstruction method

    Colombo, M., Bologna, M., Garbey, M., Berceli, S., He, Y., Rodriguez Matas, J. F., Migliavacca, F. & Chiastra, C., Jan 1 2019, In : Medical Engineering and Physics.

    Research output: Contribution to journalArticle

  8. Inference of Gene Regulatory Network Through Adaptive Dynamic Bayesian Network Modeling

    Garbey, M., Wang, Y., Berceli, S. & Wu, R., 2019, Contemporary Biostatistics with Biopharmaceutical Applications. Springer-Verlag, p. 91-113

    Research output: Chapter in Book/Report/Conference proceedingChapter

  9. Tracking Mental Workload by Multimodal Measurements in the Operating Room

    Garbey, M., Omurtag, A., Roy, R., Dehais, F. & Chatty, L., 2019, Neuroergonomics. Academic Press, p. 99-103

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. 2018
  11. Welcome OnBoard: An Interactive Large Surface Designed for Teamwork and Flexibility in Surgical Flow Management

    Rambourg, J., Gaspard-Boulinc, H., Conversy, S. & Garbey, M., Nov 19 2018, ISS 2018 - Proceedings of the 2018 ACM International Conference on Interactive Surfaces and Spaces. Association for Computing Machinery, Inc, p. 5-17 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  12. A twofold usage of an agent-based model of vascular adaptation to design clinical experiments

    Casarin, S., Berceli, S. A. & Garbey, M., Nov 1 2018, In : Journal of Computational Science. 29, p. 59-69 11 p.

    Research output: Contribution to journalArticle

  13. A Versatile Hybrid Agent-Based, Particle and Partial Differential Equations Method to Analyze Vascular Adaptation

    Garbey, M., Casarin, S., Berceli, S., Shi, Y. (ed.), Fu, H. (ed.), Tian, Y. (ed.), Krzhizhanovskaya, V. V. (ed.), Lees, M. H. (ed.), Dongarra, J. (ed.) & Sloot, P. M. A. (ed.), Jun 12 2018, p. 856-868. 13 p.

    Research output: Contribution to conferencePaper

  14. Augmenting a wireless portable ultrasound imaging with a real-time hemodynamics solver

    Lesage, A. C. & Garbey, M., Jan 8 2018, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 223-229 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. Global laparoscopy positioning system with a smart trocar

    Joerger, G., Huang, A., Bass, B. L., Dunkin, B. J. & Garbey, M., Jan 8 2018, Proceedings - 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering, BIBE 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 359-366 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  16. A computational model-based framework to plan clinical experiments – an application to vascular adaptation biology

    Casarin, S., Berceli, S. A. & Garbey, M., 2018, Computational Science – ICCS 2018 - 18th International Conference, Proceedings. Springer Verlag, Vol. 10860 LNCS. p. 352-362 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10860 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  17. A versatile hybrid agent-based, particle and partial differential equations method to analyze vascular adaptation

    Garbey, M., Casarin, S. & Berceli, S. A., 2018, (Accepted/In press) In : Biomechanics and Modeling in Mechanobiology.

    Research output: Contribution to journalArticle

  18. A Versatile Hybrid Agent-Based, Particle and Partial Differential Equations Method to Analyze Vascular Adaptation

    Garbey, M., Casarin, S. & Berceli, S., 2018, Computational Science – ICCS 2018 - 18th International Conference, Proceedings. Springer Verlag, Vol. 10861 LNCS. p. 856-868 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10861 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  19. Multimodal imaging of the breast to retrieve the reference state in the absence of gravity using finite element modeling

    Salmon, R., Nguyen, T. C., Moore, L. W., Bass, B. L. & Garbey, M., 2018, Innovation in Medicine and Healthcare 2017 -: Proceedings of the 5th KES International Conference on Innovation in Medicine and Healthcare, KES-InMed 2017. Springer Science and Business Media Deutschland GmbH, Vol. 71. p. 254-263 10 p. (Smart Innovation, Systems and Technologies; vol. 71).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  20. 2017
  21. Linking gene dynamics to vascular hyperplasia - Toward a predictive model of vein graft adaptation

    Casarin, S., Berceli, S. A. & Garbey, M., Nov 1 2017, In : PLoS ONE. 12, 11, p. e0187606 e0187606.

    Research output: Contribution to journalArticle

  22. Multiscale Understanding of Vascular Adaptation: The Vein Graft Model

    Garbey, M., Casarin, S. & Berceli, S. A., Nov 1 2017, In : Siam News. 50

    Research output: Contribution to journalArticle

  23. Augmenting a wireless portable Ultrasound Imaging with a real‐time hemodynamics solver

    Lesage, A. C. & Garbey, M., Oct 23 2017, IEEE International Conference on Bioinformatics and Bioengineering. Institute of Electrical and Electronics Engineers Inc., 30

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  24. Global Laparoscopy Positioning System with a Smart Trocar (82)

    Joerger, G., Huang, A. Y., Bass, B. L., Dunkin, B. J. & Garbey, M., Oct 23 2017, 2017, IEEE BIBE: IEEE International Conference on Bioinformatics and Bioengineering. Institute of Electrical and Electronics Engineers Inc.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  25. Vascular Adaptation: Pattern Formation and Cross Validation between an Agent Based Model and a Dynamical System

    Garbey, M., Casarin, S. & Berceli, S. A., Sep 21 2017, In : Journal of Theoretical Biology. 429, p. 149-163 15 p.

    Research output: Contribution to journalArticle

  26. A method for going from 2D laparoscope to 3D acquisition of surface landmarks by a novel computer vision approach

    Garbey, M., Nguyen, T. B., Huang, A. Y., Fikfak, V. & Dunkin, B. J., Aug 31 2017, (Accepted/In press) In : International Journal of Computer Assisted Radiology and Surgery. p. 1-14 14 p.

    Research output: Contribution to journalArticle

  27. Measuring mental workload with EEG+fNIRS

    Aghajani, H., Garbey, M. & Omurtag, A., Jul 14 2017, In : Frontiers in Human Neuroscience. 11, 359.

    Research output: Contribution to journalArticle

  28. A robust construction algorithm of the centerline skeleton for complex aortic vascular structure using computational fluid dynamics

    Touati, J., Bologna, M., Schwein, A., Migliavacca, F. & Garbey, M., Jul 1 2017, In : Computers in Biology and Medicine. 86, p. 6-17 12 p.

    Research output: Contribution to journalArticle

  29. Re-engineer operating room data acquisition and transmission for improving surgical suite awareness and management

    Joerger, G., Rambourg, J., Garbey, M., Conversy, S. & Gaspard-Boulinc, H., Apr 11 2017, 2017 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 205-208 4 p. 7897241

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  30. Optimal Flow Conditions of TracheoBronchial Model to Reengineer Lung Structures

    Garbey, M., Casarin, S., Aletti, F. & Baselli, G., Mar 10 2017, In : Acta Mechanica Sinica/Lixue Xuebao. p. 1-11 11 p.

    Research output: Contribution to journalArticle

  31. The SmartOR: a distributed sensor network to improve operating room efficiency

    Huang, A. Y., Joerger, G., Fikfak, V., Salmon, R., Dunkin, B. J., Bass, B. L. & Garbey, M., Feb 24 2017, (Accepted/In press) In : Surgical Endoscopy and Other Interventional Techniques. p. 1-6 6 p.

    Research output: Contribution to journalArticle

  32. Linking Gene Dynamics to Intimal Hyperplasia - A Predictive Model of Vein Graft Adaptation

    Casarin, S., Berceli, S. A. & Garbey, M., 2017, In : Procedia Computer Science. 108, p. 1842-1851 10 p.

    Research output: Contribution to journalArticle

  33. Multiscale Modeling of Surgical Flow in a Large Operating Room Suite: Understanding the Mechanism of Accumulation of Delays in Clinical Practice

    Garbey, M., Joerger, G., Rambourg, J., Dunkin, B. J. & Bass, B. L., 2017, In : Procedia Computer Science. 108, p. 1863-1872 10 p.

    Research output: Contribution to journalArticle

  34. 2016
  35. Esophageal stent migration: Testing few hypothesis with a simplified mathematical model

    Garbey, M., Salmon, R., Fikfak, V. & Clerc, C. O., Dec 1 2016, In : Computers in Biology and Medicine. 79, p. 259-265 7 p.

    Research output: Contribution to journalArticle

  36. Collaboration within the surgical suite: BoardProbe design for and with the surgical team

    Rambourg, J., Conversy, S., Garbey, M. & Gaspard-Boulinc, H., Oct 25 2016, IHM 2016 - Actes de la 28ieme Conference Francophone sur l'Interaction Homme-Machine. Association for Computing Machinery, Inc, p. 271-277 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  37. Multi-scale Modeling of the Cardiovascular System: Disease Development, Progression, and Clinical Intervention

    Zhang, Y., Barocas, V. H., Berceli, S. A., Clancy, C. E., Eckmann, D. M., Garbey, M., Kassab, G. S., Lochner, D. R., McCulloch, A. D., Tran-Son-Tay, R. & Trayanova, N. A., Sep 2016, In : Annals of Biomedical Engineering. 44, 9, p. 2642-60 19 p.

    Research output: Contribution to journalArticle

  38. Image-guided simulation of tissue deformation using a mechanical model on a surgical application

    Nguyen, T. B., Huang, A. Y., Fikfak, V., Dunkin, B. J. & Garbey, M., Jul 23 2016, In : Computer Methods in Biomechanics and Biomedical Engineering. p. 1-9 9 p.

    Research output: Contribution to journalArticle

  39. The SmartOR: A Distributed Sensor Network to Improve Operating Room (OR) Efficiency

    Garbey, M., Dunkin, B., Bass, B. L., Joerger, G., Salmon, R., Fikfak, V. & Huang, A. Y., Mar 1 2016, (Accepted/In press) Surgical Endoscopy: And Other Interventional Techniques Official Journal of the Society of American Gastrointestinal and Endoscopic Surgeons (SAGES) and European Association for Endoscopic Surgery (EAES). Supplement 1 ed. Springer US, Vol. 30. p. S257 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  40. 2015
  41. A robust and non-obtrusive automatic event tracking system for operating room management to improve patient care

    Huang, A. Y., Joerger, G., Salmon, R., Dunkin, B., Sherman, V., Bass, B. L. & Garbey, M., Oct 30 2015, In : Surgical endoscopy.

    Research output: Contribution to journalArticle

  42. A multiscale computational framework to understand vascular adaptation

    Garbey, M., Rahman, M. & Berceli, S., May 1 2015, In : Journal of Computational Science. 8, p. 32-47 16 p.

    Research output: Contribution to journalArticle

  43. A Transdisciplinary Approach to Improve Patient Care

    Garbey, M., Collin, T. & Saut, O., May 1 2015, In : Siam News.

    Research output: Contribution to journalArticle

  44. Interrogating a multifactorial model of breast conserving therapy with clinical data

    Salmon, R., Garbey, M., Moore, L. W. & Bass, B. L., Apr 23 2015, In : PLoS ONE. 10, 4, e0125006.

    Research output: Contribution to journalArticle

  45. A Smart Trocar for automatic tool recognition in laparoscopic surgery

    Toti, G., Garbey, M., Sherman, V., Bass, B. L. & Dunkin, B. J., Feb 21 2015, In : Surgical Innovation. 22, 1, p. 77-82 6 p.

    Research output: Contribution to journalArticle

  46. Deriving indicators for breast conserving surgery using finite element analysis

    Thanoon, D., Garbey, M. & Bass, B. L., Jan 1 2015, In : Computer Methods in Biomechanics and Biomedical Engineering. 18, 5, p. 533-544 12 p.

    Research output: Contribution to journalArticle

  47. An Intelligent Hospital Operating Room to Improve Patient Health Care

    Garbey, M., Huang, A. Y., Joerger, G., Salmon, R., Kim, J., Sherman, V., Dunkin, B. & Bass, B. L., 2015, In : Journal of Computational Surgery. 2, 1

    Research output: Contribution to journalArticle

  48. Mathematical Models to Predict Intimal Hyperplasia

    Garbey, M., Berceli, S. & Casarin, S., 2015, European Symposium Of Vascular Biomaterials .

    Research output: Chapter in Book/Report/Conference proceedingChapter

  49. Toward predictors of long-term behavior and failure after EVAR: the valuable union of semi-automatic CT scan image analysis and E-science platform?

    Garbey, M., Schwein, A., Kensicher, T., Nguyen, T., Bismuth, J., Berceli, S. & Chafke, N., 2015, European Symposium Of vascular Biomaterials.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  50. 2014
  51. A road map for computational surgery: challenges and opportunities

    Bass, B. L. & Garbey, M., Jan 10 2014, In : Journal of Computational Surgery.

    Research output: Contribution to journalArticle

  52. Computational modeling of breast conserving surgery (bcs) starting from MRI imaging

    Thanoon, D., Garbey, M. & Bass, B. L., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 67-88 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  53. Computational surgery and dual training: Computing, robotics and imaging

    Garbey, M. (ed.), Bass, B. L. (ed.), Berceli, S. (ed.), Collet, C. (ed.) & Cerveri, P. (ed.), Jan 1 2014, Springer New York. 394 p.

    Research output: Book/ReportBook

  54. Introduction: A road map for computational surgery: Challenges and opportunities

    Bass, B. L. & Garbey, M., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 3-26 24 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  55. Preface

    Garbey, M., Bass, B. L., Berceli, S., Collet, C. & Cerveri, P., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. v-vii

    Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

  56. rule-based simulation of vein graft remodeling

    Hwang, M., Garbey, M., Berceli, S. A. & Tran-Son-Tay, R., Jan 1 2014, Computational Surgery and Dual Training: Computing, Robotics and Imaging. Springer New York, p. 265-272 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  57. Modeling cervix cancer growth and response to radiation therapy: A validation study using patient volumetric tumor data

    Belfatto, A., Garbey, M., Riboldi, M., Ciardo, D., Cecconi, A., Lazzari, R., Jereczek, B. A., Orecchia, R., Baroni, G. & Cerveri, P., 2014, 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014. Institute of Electrical and Electronics Engineers Inc., p. 476-479 4 p. 6864406

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

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